Gene Expression Profiling and miRNA Discovery in a Carcinoma Model (Ambion TechNotes 14:4)

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TechNotes 14(4)

Gene Expression Profiling and miRNA Discovery in a Carcinoma Model
Supplemental Data

Table 1: Upregulated genes in ret/PTC 1 cell lines versus normal cell lines

Gene Symbol	Gene Name
PLSCR4	Phospholipid scramblase 4
TXNIP	Thioredoxin interacting protein
IFI44	Interferon-induced protein 44
PACS2	Phosphofurin acidic cluster sorting protein 2
TBC1D1	TBC1 domain family, member 1
HLA-A	Major histocompatibility complex, class 1, A
PLSCR2	Phospholipid scramblase 2
SBLF	Stoned B-like factor
PCAF	P300/CBP-associated factor
C20orfI28	Chromosome 20 open reading frame 128
MGC17403	Hypothetical protein MGC17403
MCPH1	Microcephaly, primerary autosomal recessive 1
SH3PB1	SH3-domain binding protein 1
STXBP2	Syntaxin binding protein 2
CAMLG	Calcium modulating ligand
IFITM3	Interferon induced transmembrane protein 3 (1-8U)
FRS3	Fibroblast growth factor receptor substrate 3
SEMA3F	Sema domain, immunoglobulin domain (lg), short basic domain, secreted (semaphoring) 3F
TRIM28	Tripartite motif-containing 28
CYP2D6	Cytochrome P450, family 2, subfamily D, polypeptide 6
HLA-C	Major histocompatibility complex, class 1, C
TMED6	Transmembrane emp24 protein transport domain containing 6
CCNG1	Cyclin G1
KLF10	Kruppel-like factor 10
RPL15	Ribosomal protein L15
PNPLA2	Patatin-like phospholipase domain containing 2
CEBPB	CCAAT/enhancer binding protein (C/EBP), beta
HTRA1	HtrA serine peptidase 1
ZNF329	Zinc finger protein 329
C4orf14	Chromosome 4 open reading frame 14
ARSA	Arylsulfatase A
FAM100B	Family with sequence similarity 100, member
C1orf164	Chromosome 1 open reading frame 164
RPL32	Ribosomal protein L32
YHWAE	Tyrosine 3-monooxygenase/tryptophan 5 monooxygenase activation protein, epsilon polypeptide
PAFAH1B	Platelet-activating factor acetyhydrolase, isoform 1b, alpha subunit 45 kDa
GPRC5C	G protein-coupled receptor, family C, group 5, member C
C10orf104	Chromosome 10 open reading frame 104

Table 2: Downregulated genes in ret/PTC 1 cell lines versus normal cell lines

Gene Symbol	Gene Name
POMT2	Ring finger protein 126
RNASEN	Ribonuclease III, nuclear
PSMD2	Proteasome 26S subunit, non-ATPase, 2
CSRP1	Cysteine and glycine-rich protein 1
DCTN5	Dynactin 5 (p25)
ARL4A	ADP-ribosylation factor-like 4A
TXNRD1	Thioredoxin reductase 1
Keratin type 1	Keratin type 1 cytoskeletal
PSMC1	Proteasome 26S subunit, ATPase, 1
TPM3	Tropomyosin 3
RAB32	RAB32, member RAS oncogene family
C16orf35	Chromosome 16, open reading frame 35
C21orf70	Chromosome 21, open reading frame 70
ITK	IL2 inducible T-cell kinase
TFRC	Transferrin receptor (p90, CD71)
HIST1H4L	Histone 1, H4l
TPM1	Tropomyosin 1 (alpha)
KRT 18	Keratin 18
KIAA0256	KIAA0256 gene product
RNF126	Thioreduxin reductase 1
FLJ37549	Proteasome 26S subunit, non-ATPase, 2
FGFBP1	Fibroblast growth factor binding protein 1
NPM1	Nucleophosmin (nucleolar phosphoprotein B23, numatrin)

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